Index

A

a (CircularOrbit property) a_map() (ModelPlot method) a_maps() (ModelPlot method) acceleration (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) ACE3D (class in pytmosph3r.chemistry.ace3d) add_ray_origin() (CartesianCoordinateSystem method) (Observer method) aer_reff_densities (PrepareAerosols attribute) aerosol() (Model method) aerosols (AltitudeAtmosphere attribute) (Atmosphere attribute) (InputAtmosphere attribute) (LoadPlot property) (Model property) aerosols_array_iterator() (in module pytmosph3r.util.util) aerosols_dict (Model attribute) aerosols_units (DiagfiModel attribute) albedo_surf (Atmosphere attribute) (InputAtmosphere attribute) all_longitudes (Grid3D property) altitude (AltitudeAtmosphere attribute) (Atmosphere attribute) (InputAtmosphere attribute) (LoadPlot property) (Model property)

altitude_interp() (AltitudeAtmosphere method) altitude_levels (AltitudeAtmosphere attribute) AltitudeAtmosphere (class in pytmosph3r.atmosphere.altitudeatmosphere) altitudes (BasePlot attribute) AMU (in module pytmosph3r.util.constants) angle (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) (PointCircle attribute) angle_from_sides() (in module pytmosph3r.util.geometry) angle_to_integral() (Transmission method) angles (RaysGrid attribute) angles_limits (RaysGrid attribute) angular_inter (CircleIntersection attribute) arrays_to_zeros() (in module pytmosph3r.util.util) ATMOModel (class in pytmosph3r.model.ATMOmodel) Atmosphere (class in pytmosph3r.atmosphere.atmosphere) atmosphere (LoadPlot property) (Model property) (PrepareAerosols attribute) (Transmission property) atmosphere_only (Lightcurve attribute) attrs (HDF5Input property) AU (in module pytmosph3r.util.constants) available_memory() (MemoryUtils method)

B

BasePlot (class in pytmosph3r.plot.plotutils) BaseStar (class in pytmosph3r.planetary_system.star.base) beta (Simple2DTemperature attribute) beta_rad (Simple2DTemperature property) bilinear_interpolation_array() (in module pytmosph3r.util.math) bin_down() (BasePlot method) BlackbodyStar (class in pytmosph3r.planetary_system.star.star_blackbody) build() (ACE3D method) (AltitudeAtmosphere method) (Atmosphere method) (Chemistry method) (CircularOrbit method) (Emission method) (FastChemistry method) (Lightcurve method) (Model method) (Observer method) (Parmentier2018Dissociation method) (Phasecurve method) (Planet method) (Rays method) (Simple2DTemperature method) (StandardRatioHeH2 method) (Transmission method)

C

cartesian_system (Observer property) (Rays property) CartesianCoordinateSystem (class in pytmosph3r.util.geometry) check_memory() (MemoryUtils method) chem_file (ATMOModel attribute) chemistry (Atmosphere attribute) Chemistry (class in pytmosph3r.chemistry.chemistry) chemistry_factory() (in module pytmosph3r.config.factory) cia (Opacity attribute) CircleIntersection (class in pytmosph3r.util.geometry) circular_segment() (in module pytmosph3r.util.geometry) CircularOrbit (class in pytmosph3r.planetary_system.orbit.orbit_circular) clipped_colorbar() (in module pytmosph3r.plot.plotutils) close() (Input method) (LoadPlot method) (Output method) cmap (Comparison attribute) (Plot attribute) co_ratio (ACE3D attribute) coeffs (LimbDarkening attribute) comp_legend() (Comparison method) Comparison (class in pytmosph3r.plot.comparison) compute() (Emission method) (Lightcurve method) (LimbDarkening method) (Opacity method) (Phasecurve method) (PrepareAerosols method) (Transmission method) compute_altitude() (Atmosphere method) compute_angles() (RaysGrid method) compute_contribution() (Transmission method) compute_contribution_function (Emission attribute) compute_integral() (Parallel method) (Transmission method) compute_intersections_points() (CircleIntersection method)

compute_intersections_surfaces() (CircleIntersection method) compute_molar_mass() (Atmosphere method) compute_optical_depth() (in module pytmosph3r.observations.transmission) (Transmission method) compute_optical_depth_mie() (in module pytmosph3r.observations.transmission) compute_pressure() (AltitudeAtmosphere method) compute_projection() (Emission method) compute_radii() (RaysGrid method) compute_rays_opacities() (Lightcurve method) compute_sub_rays() (Rays method) compute_sub_rays_angle() (Rays method) compute_sub_rays_angles() (Rays method) compute_surface_sector() (in module pytmosph3r.util.geometry) compute_vmr() (Chemistry method) (FastChemistry method) (InterpolationChemistry method) (Parmentier2018Dissociation method) (StandardRatioHeH2 method) Config (class in pytmosph3r.config.readconfig) convert_log() (in module pytmosph3r.util.util) coordinates (Observer property) coordinates() (CartesianCoordinateSystem method) CoordinateSystem (class in pytmosph3r.util.geometry) coords (PointCartesian property) (PointCircle property) (PointSpherical property) cos_central_angle() (in module pytmosph3r.util.geometry) create_group() (Output method) create_obj() (in module pytmosph3r.config.factory) create_tempfile() (in module pytmosph3r.chemistry.fastchemistry) createDimension() (ncOutput method) createGroup() (Output method) createVariable() (ncOutput method) critical() (Logger method) criticalLogging() (in module pytmosph3r.log) curve() (BasePlot method) CurvePlot (class in pytmosph3r.plot.modelplot)

D

data (InterpolationChemistry attribute) day_longitudes (Grid3D property) debug() (in module pytmosph3r) (Logger method) debugLogging() (in module pytmosph3r.log) deep_abundances (Parmentier2018Dissociation attribute) default_value() (Model method) default_values (Model property) default_values() (Lightcurve method) (Transmission method) determine_class() (in module pytmosph3r.config.factory) df (InterpolationChemistry attribute) DiagfiModel (class in pytmosph3r.model.diagfimodel) diff_curves() (Comparison method)

diff_fluxes() (Comparison method) diff_lightcurves() (Comparison method) diff_phasecurves() (Comparison method) diff_spectra() (Comparison method) dim (Transmission attribute) dimension (Parallel attribute) direction (CoordinateSystem attribute) disableLogging() (in module pytmosph3r.log) dist() (CircleIntersection method) (in module pytmosph3r.util.geometry) doppler (Model property) (Opacity attribute) dump_profiling() (Model method) dz (RaysGrid attribute)

E

Emission (class in pytmosph3r.observations.emission) emission (Model attribute) emission() (LoadPlot method) emission_atmosphere (Model attribute) emission_map() (ModelPlot method) emission_spectrum() (ModelPlot method) emissions() (Phasecurve method)

enableLogging() (in module pytmosph3r.log) end (Phasecurve attribute) end_transit (Lightcurve property) error() (Logger method) extend_b() (in module pytmosph3r.model.diagfimodel) extend_bt() (in module pytmosph3r.model.diagfimodel) extra_longitude (DiagfiModel attribute)

F

f (Group attribute) (HDF5Group attribute) (Input attribute) (ncGroup attribute) (Output attribute) (Plot attribute) factor_dict (LimbDarkening attribute) factor_normalized (Emission attribute) factory() (in module pytmosph3r.config.factory) fast_solve_latitude() (in module pytmosph3r.util.geometry) fastchem_name() (in module pytmosph3r.chemistry.fastchemistry) FastChemistry (class in pytmosph3r.chemistry.fastchemistry) figure() (BasePlot static method) FileModel (class in pytmosph3r.model.model) filename (FileModel attribute) (Input attribute) (Logger attribute) (Model attribute) (Output attribute)

filter_out() (Rays method) find_mol() (in module pytmosph3r.model.ATMOmodel) find_spectral() (BasePlot method) fix_unit_breakage() (in module pytmosph3r.interface.io) flux (Lightcurve attribute) flux() (BasePlot method) fromBolometricLuminosity() (BlackbodyStar class method) (SpectrumStar class method) fromEffectiveTemperature() (BlackbodyStar class method) fromJupiter() (Planet class method) fromQuantity() (Opacity class method) fromSolar() (BlackbodyStar class method)

G

G (in module pytmosph3r.util.constants) gas() (Model method) gas_dict (Model attribute) gas_mix_ratio (Atmosphere attribute) (InputAtmosphere attribute) (LoadPlot property) (Model property) gas_units (DiagfiModel attribute) gases (ATMOModel attribute) (Chemistry attribute) (Parmentier2018Dissociation attribute) (StandardRatioHeH2 attribute) generate_altitude_grid() (AltitudeAtmosphere method) generate_class() (Config method) generate_model() (Config method) get() (HDF5Input method) (HDF5Output method) (in module pytmosph3r.util.util) (Input method) (ncGroup method) (ncInput method) (ncOutput method) (Output method) get_2D() (in module pytmosph3r.util.util) get_altitude_index() (in module pytmosph3r.util.util) get_attributes() (in module pytmosph3r.util.util) get_chunk() (in module pytmosph3r.util.util) get_chunk_size() (in module pytmosph3r.util.util) get_class() (in module pytmosph3r.config.factory) get_column() (in module pytmosph3r.util.util) get_func() (LimbDarkening method) get_index() (in module pytmosph3r.util.util) get_latitude_index() (in module pytmosph3r.util.util)

get_longitude_index() (in module pytmosph3r.util.util) get_methods() (in module pytmosph3r.util.util) get_spectral() (BasePlot method) (in module pytmosph3r.plot.plotutils) get_spectral_chunks() (Lightcurve method) get_value_dim() (BasePlot method) get_var() (DiagfiModel method) get_wls() (in module pytmosph3r.util.util) getattr() (BasePlot method) getclass() (HDF5Input method) (HDF5Output method) (Input method) (ncInput method) (ncOutput method) (Output method) getunit() (HDF5Input method) (Input method) gravity (Atmosphere attribute) gravity() (Planet method) grid (Atmosphere attribute) Grid (class in pytmosph3r.grid) grid (InputAtmosphere attribute) (LoadPlot property) (Model property) Grid3D (class in pytmosph3r.grid) grid_to_radians() (DiagfiModel method) grid_to_transmittance() (Transmission method) Group (class in pytmosph3r.interface.io) group_class (HDF5Output attribute) (ncOutput attribute) (Output attribute) group_func (HDF5Output attribute) (ncOutput attribute) (Output attribute)

H

H2_dissociation (Parmentier2018Dissociation attribute) h5_to_nc() (in module pytmosph3r.cli.interface_h5_to_nc) h_unit (Plot attribute) half_longitudes (Grid3D property) HDF5Group (class in pytmosph3r.interface.hdf5)

HDF5Input (class in pytmosph3r.interface.hdf5) HDF5Model (class in pytmosph3r.model.hdf5model) HDF5Output (class in pytmosph3r.interface.hdf5) horizontal_run() (Grid3D method) horizontal_walk() (Grid3D method)

I

identical (Transmission attribute) idx_latitude (Plot property) idx_longitude (Plot property) inclination (CircleIntersection property) (CircularOrbit property) index_altitude() (AltitudeAtmosphere method) index_colatitude() (Grid3D method) index_latitude() (Grid3D method) index_longitude() (Grid3D method) info() (Logger method) init_array() (in module pytmosph3r.util.util) init_rays() (in module pytmosph3r.rays) init_spectral() (BasePlot method) init_subrays() (Rays method) init_time() (BasePlot method) Input (class in pytmosph3r.interface.io) input_atmosphere (Model attribute) input_vmr (Atmosphere attribute) input_z (LoadPlot property) input_z_levels (LoadPlot property) InputAtmosphere (class in pytmosph3r.atmosphere.inputatmosphere) inputs() (ACE3D method) (ATMOModel method) (Chemistry method) (DiagfiModel method) (FastChemistry method) (FileModel method) (InterpolationChemistry method) (Lightcurve method) (Logger method) (Parmentier2018Dissociation method) (Plot method) (StandardRatioHeH2 method)

inputs_values() (Logger method) integrate_circles_intersections() (in module pytmosph3r.util.geometry) interactive (BasePlot attribute) interp (Model attribute) interp1d() (in module pytmosph3r.util.math) interp_ind_weights() (in module pytmosph3r.util.math) interp_transmittances() (LoadPlot method) interpolate_from_input() (AltitudeAtmosphere method) InterpolationChemistry (class in pytmosph3r.chemistry.interpolation) intersection_circles() (in module pytmosph3r.util.geometry) intersections() (CircleIntersection method) is_tidal_locked (CircularOrbit property) (Orbit property) isEnabledFor() (Logger method)

K

k_data (Opacity attribute) KBOLTZ (in module pytmosph3r.util.constants)

keys() (Input method) (ncInput method) kwargs (Emission attribute)

L

label (Plot attribute) label_from_dim() (in module pytmosph3r.plot.plotutils) last_log (in module pytmosph3r.log) lat_angle (Grid3D property) latitude (BasePlot attribute) (Observer attribute) (PointSpherical attribute) (Rays property) latitude() (CoordinateSystem method) (Grid3D method) latitudes (BasePlot attribute) (Grid3D property) latitudes_intersection() (Rays method) LD (in module pytmosph3r.observations.limbdarkening) ld_linear() (in module pytmosph3r.observations.limbdarkening) ld_nonlinear() (in module pytmosph3r.observations.limbdarkening) ld_power2() (in module pytmosph3r.observations.limbdarkening) ld_quadratic() (in module pytmosph3r.observations.limbdarkening) ld_uniform() (in module pytmosph3r.observations.limbdarkening) legend() (BasePlot method) legend2D() (BasePlot method) (Comparison method) legend_out() (in module pytmosph3r.plot.plotutils)

length (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) levels_intersection() (Rays method) Lightcurve (class in pytmosph3r.observations.lightcurve) lightcurve (Model attribute) lightcurve() (LoadPlot method) limb_darkening (Lightcurve attribute) LimbDarkening (class in pytmosph3r.observations.limbdarkening) load_gas_database() (Opacity method) LoadPlot (class in pytmosph3r.plot.plotutils) log (in module pytmosph3r.config.factory) Logger (class in pytmosph3r.log.logger) logp_grid (InterpolationChemistry attribute) lon_angle (Grid3D property) longitude (BasePlot attribute) (Observer attribute) (PointSpherical attribute) (Rays property) longitude() (CoordinateSystem method) (Grid3D method) longitudes (BasePlot attribute) (Grid3D property) longitudes_intersection() (Rays method) luminosity_from_temperature() (in module pytmosph3r.planetary_system.star.star_blackbody)

M

main() (in module pytmosph3r.cli.p3) (in module pytmosph3r.plot.plot) make_3D() (Grid3D method) make_array() (in module pytmosph3r.util.util) map_2D() (ModelPlot method) margin (MemoryUtils attribute) mass (BaseStar attribute) (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) (Planet property) mass_jup (Planet property) mass_sol (BaseStar property) mass_to_surface_gravity() (in module pytmosph3r.planetary_system.planet) max_altitude (AltitudeAtmosphere attribute) max_pressure (Atmosphere attribute) (InputAtmosphere attribute) memory_aware (Transmission attribute) memory_usage() (in module pytmosph3r.util.memory) MemoryUtils (class in pytmosph3r.util.memory) merge_attrs() (in module pytmosph3r.util.util) metallicity (ACE3D attribute) method (LimbDarkening attribute) mid_latitudes (Grid3D property) mid_longitudes (Grid3D property) min_input_pressure (Atmosphere attribute) min_pressure (Atmosphere attribute) (InputAtmosphere attribute) MJUP (in module pytmosph3r.util.constants) mode() (BasePlot method) (LoadPlot method) mode_keys (Model attribute) model (Atmosphere attribute) (CircleIntersection attribute) Model (class in pytmosph3r.model.model) model (Lightcurve attribute) (LoadPlot property) (PrepareAerosols attribute) (Transmission attribute) model_factory() (in module pytmosph3r.config.factory) ModelPlot (class in pytmosph3r.plot.modelplot) models (Comparison attribute) modes (BasePlot attribute) (Model attribute) module pytmosph3r pytmosph3r.aerosols pytmosph3r.atmosphere pytmosph3r.atmosphere.altitudeatmosphere pytmosph3r.atmosphere.atmosphere pytmosph3r.atmosphere.inputatmosphere pytmosph3r.atmosphere.simple2d pytmosph3r.chemistry pytmosph3r.chemistry.ace3d pytmosph3r.chemistry.chemistry pytmosph3r.chemistry.dissociation pytmosph3r.chemistry.fastchemistry pytmosph3r.chemistry.interpolation pytmosph3r.chemistry.standard pytmosph3r.cli pytmosph3r.cli.interface_h5_to_nc pytmosph3r.cli.interface_nc_to_h5 pytmosph3r.cli.interface_nc_to_nc pytmosph3r.cli.p3 pytmosph3r.cli.parser pytmosph3r.config pytmosph3r.config.factory pytmosph3r.config.readconfig pytmosph3r.external pytmosph3r.grid pytmosph3r.interface pytmosph3r.interface.hdf5 pytmosph3r.interface.io pytmosph3r.interface.netcdf pytmosph3r.log pytmosph3r.log.logger pytmosph3r.model pytmosph3r.model.ATMOmodel pytmosph3r.model.diagfimodel pytmosph3r.model.hdf5model pytmosph3r.model.model pytmosph3r.observations pytmosph3r.observations.emission pytmosph3r.observations.lightcurve pytmosph3r.observations.limbdarkening pytmosph3r.observations.parallel pytmosph3r.observations.phasecurve pytmosph3r.observations.transmission pytmosph3r.opacity pytmosph3r.planetary_system pytmosph3r.planetary_system.observer pytmosph3r.planetary_system.orbit pytmosph3r.planetary_system.orbit.base pytmosph3r.planetary_system.orbit.orbit_circular pytmosph3r.planetary_system.planet pytmosph3r.planetary_system.star pytmosph3r.planetary_system.star.base pytmosph3r.planetary_system.star.star_blackbody pytmosph3r.planetary_system.star.star_spectrum pytmosph3r.plot pytmosph3r.plot.comparison pytmosph3r.plot.modelplot pytmosph3r.plot.plot pytmosph3r.plot.plotutils pytmosph3r.rays pytmosph3r.util pytmosph3r.util.astropy_utils pytmosph3r.util.astropy_utils.astropy_utils_physical_types pytmosph3r.util.constants pytmosph3r.util.geometry pytmosph3r.util.math pytmosph3r.util.memory pytmosph3r.util.pkg_dir pytmosph3r.util.profiling pytmosph3r.util.util

mol_key() (in module pytmosph3r.util.util) molar_mass (Atmosphere attribute) (InputAtmosphere attribute) (Model property) MSOL (in module pytmosph3r.util.constants) mu_from_obs (Emission attribute) MultiProcTransit (class in pytmosph3r.observations.parallel)

N

n_angular (RaysGrid property) n_egress (Lightcurve attribute) n_in_star (Lightcurve property) n_latitudes (Atmosphere property) (Grid3D attribute) (LoadPlot property) (Model property) n_layers (AltitudeAtmosphere property) (LoadPlot property) (Model property) n_levels (AltitudeAtmosphere property) (LoadPlot property) (Model property) n_longitudes (Atmosphere property) (Grid3D attribute) (LoadPlot property) (Model property) n_phases (Lightcurve attribute) (Phasecurve attribute) n_radial (RaysGrid property) n_transmittances (Lightcurve attribute)

n_vertical (Atmosphere property) (Grid3D attribute) (Model attribute) nc_to_h5() (in module pytmosph3r.cli.interface_nc_to_h5) nc_to_nc() (in module pytmosph3r.cli.interface_nc_to_nc) ncGroup (class in pytmosph3r.interface.netcdf) ncInput (class in pytmosph3r.interface.netcdf) ncOutput (class in pytmosph3r.interface.netcdf) ndim (Grid property) neg_pi() (in module pytmosph3r.planetary_system.orbit.orbit_circular) night_longitudes (Grid3D property) nmax() (in module pytmosph3r.util.math) nmin() (in module pytmosph3r.util.math) noise (LoadPlot property) (Model attribute) noised_spectrum (LoadPlot property) (Model attribute) norm (PointCartesian property) norm2 (PointCartesian property) nprocs (Parallel attribute) nround() (in module pytmosph3r.util.math)

O

obs_long_to_phase() (CircularOrbit method) (Orbit method) Observer (class in pytmosph3r.planetary_system.observer) observer (Model attribute) (Rays attribute) observer_from_phase() (CircularOrbit method) (Orbit method) observer_from_time() (CircularOrbit method) Opacity (class in pytmosph3r.opacity) opacity (Model attribute) (Transmission property) open() (Input method) orbit (CircleIntersection property) Orbit (class in pytmosph3r.planetary_system.orbit.base) orbit (Model attribute) (Observer property) (Rays property)

out_folder (Comparison attribute) (Plot attribute) Output (class in pytmosph3r.interface.io) output_file (Model attribute) outputs() (AltitudeAtmosphere method) (Emission method) (Grid3D method) (InputAtmosphere method) (Lightcurve method) (Model method) (Opacity method) (Phasecurve method) (Rays method) (Transmission method) override_data_file() (Model method) override_file_param() (Model method)

P

p_id (Plot attribute) p_iso (Simple2DTemperature attribute) p_min (LoadPlot property) p_min_aerosols (Atmosphere attribute) Parallel (class in pytmosph3r.observations.parallel) parallel (Model attribute) parallel_factory() (in module pytmosph3r.config.factory) Parmentier2018Dissociation (class in pytmosph3r.chemistry.dissociation) partial_transit() (Lightcurve method) path_leaf() (in module pytmosph3r.plot.plotutils) per_angle (Lightcurve attribute) (Transmission attribute) period (CircularOrbit property) ph_index (Plot attribute) phase() (CircularOrbit method) phase_from_observer() (CircularOrbit method) (Orbit method) phase_to_obs_long() (CircularOrbit method) (Orbit method) Phasecurve (class in pytmosph3r.observations.phasecurve) phasecurve (Model attribute) phasecurve() (LoadPlot method) phases (Lightcurve attribute) (Phasecurve attribute) PI (in module pytmosph3r.util.constants) pkg_dir (in module pytmosph3r.util.pkg_dir) pkg_name (in module pytmosph3r.util.pkg_dir) PLANCK (in module pytmosph3r.util.constants) planet (Atmosphere attribute) Planet (class in pytmosph3r.planetary_system.planet) planet (Model attribute) planet_to_star_flux_ratio (Emission attribute) planet_to_top_flux_ratio (Emission attribute) Plot (class in pytmosph3r.plot.modelplot) plot_2D() (ModelPlot method) plot_2d_flux() (CurvePlot method) plot_2d_fluxes_residuals() (Comparison method) plot_2d_lightcurve() (CurvePlot method) plot_2d_lightcurves_residuals() (Comparison method) plot_2d_phasecurve() (CurvePlot method) plot_2d_phasecurves_residuals() (Comparison method) plot_2Dmap() (ModelPlot method) plot_column() (BasePlot method) plot_columns() (BasePlot method) plot_curve() (CurvePlot method) plot_curves() (Comparison method) plot_diff_curves() (Comparison method) plot_diff_lightcurves() (Comparison method) plot_diff_phasecurves() (Comparison method) plot_diff_spectra() (Comparison method) plot_emission() (ModelPlot method) plot_lightcurve() (CurvePlot method) plot_lightcurves() (Comparison method) plot_phasecurve() (CurvePlot method) plot_phasecurves() (Comparison method) plot_points() (ModelPlot method) plot_points_ray() (ModelPlot method) plot_rays() (ModelPlot method) plot_sector_star() (in module pytmosph3r.plot.plotutils) plot_spectra() (Comparison method) plot_spectrum() (ModelPlot method) plot_tp() (Comparison method) (ModelPlot method) plot_tps() (ModelPlot method) plot_x() (ModelPlot method) plot_xprofile() (Comparison method) (ModelPlot method) plot_xprofiles() (ModelPlot method) plot_zp() (Comparison method) (ModelPlot method) plot_zps() (ModelPlot method) PointCartesian (class in pytmosph3r.util.geometry) PointCircle (class in pytmosph3r.util.geometry) PointSpherical (class in pytmosph3r.util.geometry) position_from_phase() (Observer method) position_from_time() (Observer method) positive_latitudes (Grid3D property) prepare_opacities() (Transmission method) PrepareAerosols (class in pytmosph3r.aerosols) pressure (Atmosphere attribute) (InputAtmosphere attribute) (LoadPlot property) (Model property) pressure_levels (LoadPlot property) profiler() (in module pytmosph3r.util.profiling) prop_colors (in module pytmosph3r.plot.plot) prop_cycle (in module pytmosph3r.plot.plot) ps (Atmosphere attribute) pt_file (ATMOModel attribute) pytmosph3r module pytmosph3r.aerosols module pytmosph3r.atmosphere module pytmosph3r.atmosphere.altitudeatmosphere module pytmosph3r.atmosphere.atmosphere module pytmosph3r.atmosphere.inputatmosphere module pytmosph3r.atmosphere.simple2d module pytmosph3r.chemistry module pytmosph3r.chemistry.ace3d module pytmosph3r.chemistry.chemistry module pytmosph3r.chemistry.dissociation module pytmosph3r.chemistry.fastchemistry module pytmosph3r.chemistry.interpolation module

pytmosph3r.chemistry.standard module pytmosph3r.cli module pytmosph3r.cli.interface_h5_to_nc module pytmosph3r.cli.interface_nc_to_h5 module pytmosph3r.cli.interface_nc_to_nc module pytmosph3r.cli.p3 module pytmosph3r.cli.parser module pytmosph3r.config module pytmosph3r.config.factory module pytmosph3r.config.readconfig module pytmosph3r.external module pytmosph3r.grid module pytmosph3r.interface module pytmosph3r.interface.hdf5 module pytmosph3r.interface.io module pytmosph3r.interface.netcdf module pytmosph3r.log module pytmosph3r.log.logger module pytmosph3r.model module pytmosph3r.model.ATMOmodel module pytmosph3r.model.diagfimodel module pytmosph3r.model.hdf5model module pytmosph3r.model.model module pytmosph3r.observations module pytmosph3r.observations.emission module pytmosph3r.observations.lightcurve module pytmosph3r.observations.limbdarkening module pytmosph3r.observations.parallel module pytmosph3r.observations.phasecurve module pytmosph3r.observations.transmission module pytmosph3r.opacity module pytmosph3r.planetary_system module pytmosph3r.planetary_system.observer module pytmosph3r.planetary_system.orbit module pytmosph3r.planetary_system.orbit.base module pytmosph3r.planetary_system.orbit.orbit_circular module pytmosph3r.planetary_system.planet module pytmosph3r.planetary_system.star module pytmosph3r.planetary_system.star.base module pytmosph3r.planetary_system.star.star_blackbody module pytmosph3r.planetary_system.star.star_spectrum module pytmosph3r.plot module pytmosph3r.plot.comparison module pytmosph3r.plot.modelplot module pytmosph3r.plot.plot module pytmosph3r.plot.plotutils module pytmosph3r.rays module pytmosph3r.util module pytmosph3r.util.astropy_utils module pytmosph3r.util.astropy_utils.astropy_utils_physical_types module pytmosph3r.util.constants module pytmosph3r.util.geometry module pytmosph3r.util.math module pytmosph3r.util.memory module pytmosph3r.util.pkg_dir module pytmosph3r.util.profiling module pytmosph3r.util.util module pytmosph3r_parser() (in module pytmosph3r.cli.parser)

Q

query_yes_no() (in module pytmosph3r.util.util)

R

R (LoadPlot property) r (LoadPlot property) (RaysGrid attribute) r() (CircularOrbit method) (Orbit method) r_factor (Plot attribute) r_limits (RaysGrid attribute) radial_inter (CircleIntersection attribute) radius (BaseStar attribute) (Planet attribute) (PointCircle attribute) (PointSpherical attribute) radius() (CoordinateSystem method) radius_jup (Planet property) radius_sol (BaseStar property) ratio_HeH2 (Parmentier2018Dissociation attribute) (StandardRatioHeH2 attribute) ray_origin (CoordinateSystem attribute) rayleigh (Opacity attribute) rays (CircleIntersection property) Rays (class in pytmosph3r.rays) rays (Lightcurve attribute) (Transmission attribute) rays() (LoadPlot method) rays_indices (Rays attribute) rays_lengths (Rays attribute) RaysGrid (class in pytmosph3r.rays) rcp (Atmosphere attribute)

read() (Config method) (Input method) read_aerosols() (DiagfiModel method) read_data() (ATMOModel method) (DiagfiModel method) (FileModel method) (HDF5Model method) (Model method) read_gases() (DiagfiModel method) read_winds() (DiagfiModel method) recompute_molar_mass (Atmosphere attribute) regular_latitudes (Grid3D property) relative_dir (in module pytmosph3r.util.pkg_dir) retrieve_name() (in module pytmosph3r.util.util) retrieve_results() (Parallel method) RGP (in module pytmosph3r.util.constants) RJUP (in module pytmosph3r.util.constants) rk (MultiProcTransit attribute) root_dir (in module pytmosph3r.util.pkg_dir) root_logger (in module pytmosph3r.log.logger) roots() (in module pytmosph3r.util.math) rotate (Lightcurve attribute) Rp (LoadPlot property) Rp() (Model method) Rs (LoadPlot property) (Model property) RSOL (in module pytmosph3r.util.constants) run() (Model method)

S

save_column() (BasePlot method) save_plot() (BasePlot method) scaleheight (Atmosphere attribute) search_path() (Logger method) set_mode_attr() (LoadPlot method) set_title() (BasePlot method) setLogLevel() (in module pytmosph3r.log) setup_globals() (Config method) shape (Chemistry property) (Grid property) (Grid3D property) (LoadPlot property) (Model property) (RaysGrid property) (Transmission attribute) Simple2DTemperature (class in pytmosph3r.atmosphere.simple2d) simple_2D() (in module pytmosph3r.atmosphere.simple2d) simple_2D_vmr() (in module pytmosph3r.atmosphere.simple2d) size (Transmission attribute) sma (CircleIntersection property) solve_latitude() (CartesianCoordinateSystem method) solve_longitude() (CoordinateSystem method) solve_radius() (CoordinateSystem method) SPDLIGT (in module pytmosph3r.util.constants) spectral_chunks() (in module pytmosph3r.util.util) spectrum (Emission attribute) (LoadPlot property) (Model property) spectrum() (BaseStar method) spectrum_label() (BasePlot method) spectrum_like() (BaseStar method) spectrum_noised (Model property)

spectrum_normalized (Emission attribute) spectrum_value (Model property) SpectrumStar (class in pytmosph3r.planetary_system.star.star_spectrum) speed (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) spherical_direction (CartesianCoordinateSystem attribute) StandardRatioHeH2 (class in pytmosph3r.chemistry.standard) star (CircleIntersection attribute) (Model attribute) star_coordinates (CircularOrbit property) star_coordinates_projected() (CircularOrbit method) (Orbit method) star_factory() (in module pytmosph3r.config.factory) star_rays_opacity() (Lightcurve method) start (Phasecurve attribute) start_profiling() (Model method) stats_file (Model property) stellar_mode (Emission attribute) store_raw_flux (Emission attribute) (Phasecurve attribute) store_transmittance (Lightcurve attribute) (Transmission attribute) store_transmittances (Lightcurve attribute) subrays_length() (Rays method) substellar_longitude (Plot attribute) suffix (Comparison attribute) (Plot attribute) summary() (Logger method) surface (Model property) surface_gravity (Planet attribute) surface_projection() (in module pytmosph3r.observations.emission) surface_resolution (Emission attribute) synchronize() (Parallel method)

T

T_day (Simple2DTemperature attribute) T_deep (Simple2DTemperature attribute) t_grid (InterpolationChemistry attribute) t_map() (ModelPlot method) t_maps() (ModelPlot method) T_min (Parmentier2018Dissociation attribute) T_night (Simple2DTemperature attribute) temperature (Atmosphere attribute) (BlackbodyStar attribute) (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) (InputAtmosphere attribute) (LoadPlot property) (Model property) temperature_from_luminosity() (in module pytmosph3r.planetary_system.star.star_blackbody) time (in module pytmosph3r.util.astropy_utils.astropy_utils_physical_types) time() (CircularOrbit method) time_fmt() (in module pytmosph3r.plot.plotutils) time_from_observer() (CircularOrbit method) timer() (in module pytmosph3r.util.util) times (Lightcurve property) title (Comparison attribute) (Plot attribute) to_east (Grid3D property) to_north (Grid3D property) to_radians() (in module pytmosph3r.util.util)

to_SI() (in module pytmosph3r.util.util) top_altitude (RaysGrid attribute) top_flux_from_star (Emission attribute) tp_legend() (Comparison method) (ModelPlot method) transform() (Config method) transit_depth_angle() (in module pytmosph3r.observations.parallel) transit_depth_grid() (in module pytmosph3r.observations.parallel) transit_depth_i() (in module pytmosph3r.observations.parallel) transit_depth_wn() (in module pytmosph3r.observations.parallel) Transmission (class in pytmosph3r.observations.transmission) transmission (Model attribute) transmission() (LoadPlot method) transmission_atmosphere (Model attribute) transmission_spectrum() (ModelPlot method) transmittance() (LoadPlot method) transmittance_animation() (ModelPlot method) transmittance_map() (Comparison method) (ModelPlot method) transmittance_maps() (ModelPlot method) transmittance_phases (Lightcurve attribute) transmittance_surfaces (Lightcurve attribute) transmittance_to_integral() (Transmission method) transparent_gases (InputAtmosphere attribute) triangle_surface() (in module pytmosph3r.util.geometry)

U

unit (Observer attribute) unit_angle (RaysGrid property)

units (Rays property) units_from_dim() (in module pytmosph3r.plot.plotutils) update_dict() (in module pytmosph3r.util.util)

V

var_dict (ATMOModel attribute) (DiagfiModel attribute) var_dict_2d (ATMOModel attribute)

variable (HDF5Input attribute) (Input attribute) verbose (Logger attribute) vertical_in_pressure (Plot attribute)

W

w_index (BasePlot attribute) walk() (Grid method) warning() (Logger method) warningLogging() (in module pytmosph3r.log) wasp121b_coeffs (Parmentier2018Dissociation attribute) wasp121b_deep_abundances_log (Parmentier2018Dissociation attribute) winds (InputAtmosphere attribute) wledges (Model property) wls (Comparison property) (Model property) wn_albedo_cutoff (Atmosphere attribute) (InputAtmosphere attribute) wn_chunks() (Transmission method) wn_contribution (Lightcurve attribute) (Transmission attribute) wn_range (Opacity attribute) wn_to_integral() (Transmission method) wn_to_transmittance() (Transmission method) wnedges (LoadPlot property) (Model property) (Opacity property) (Phasecurve attribute)

wns (Comparison property) (Lightcurve attribute) (LoadPlot property) (Model property) (Opacity property) (Phasecurve attribute) write_dictionary() (Output method) write_hdf5() (in module pytmosph3r.interface.hdf5) write_item() (Output method) write_list() (Output method) write_model() (ncOutput method) write_mol() (ncOutput method) write_mol_dict() (ncOutput method) write_netcdf() (in module pytmosph3r.interface.netcdf) write_obj() (Output method) write_output() (Output method) write_spectrum() (in module pytmosph3r.interface.io) write_string_array() (HDF5Output method)

X

x (PointCartesian attribute) x_axis_curve() (BasePlot method) x_colors (BasePlot attribute)

x_legend() (Comparison method) (ModelPlot method) x_map() (ModelPlot method) x_maps() (ModelPlot method)

Y

y (PointCartesian attribute)

y_coeff (CartesianCoordinateSystem property)

Z

z (LoadPlot property) (PointCartesian attribute) z_idx (LoadPlot property)

z_levels (LoadPlot property) zmax (Plot attribute) zp_legend() (Comparison method) (ModelPlot method)